Shayan Jalali Bioinformatics • Computational Biology • ML

Turning biological data into insight.

I work across transcriptomics, systems biology, and modeling. Explore my projects, publications, and get my CV below.

Quick facts

  • 🎓 MSc in Medical Biotechnology (UPO, Italy)
  • 🔬 Erasmus+ researcher at RCSI Dublin
  • 🧮 Modeling: Julia, R, Python
  • 📍 Novara, Italy · Dublin, Ireland
RPythonJuliaWGCNADEGSEACytoscape

About

I'm a computational biologist focused on biomarker discovery and systems modeling. I build reproducible analyses and clean visualizations, typically in R/Python, and I prototype mathematical models (ODEs) in Julia.

Projects

AML Erythropoiesis Modeling

AML Erythropoiesis Modeling

Julia ODE models for erythroblastic islands and nurse macrophages; sensitivity analyses (Sobol, Morris).

View repo
Gastric Cancer Machine Learning

Gastric Cancer ML

Transcriptomics + ML for biomarker panels and peritoneal metastasis prediction; external GEO validation.

View repo
Single-cell RNA-seq Pipelines

Single‑cell Pipelines

scRNA‑seq preprocessing, clustering, and DE with Seurat/Scanpy; pathway enrichment and network analysis.

View repo

Publications & Works

Contact

Choose an email or find me on these platforms: